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fmt [2019-08-01 11:07:43]

methionyl-tRNA formyltransferase
locus
BSU_15730
pI
5.62
mw
34.48 kDa
protein length
317 aa Sequence Blast
gene length
954 bp Sequence Blast
function
formylation of Met-tRNA(fMet)
product
methionyl-tRNA formyltransferase
essential
no
ec
2.1.2.9
synonyms
yloL
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.8|tRNA modification and maturation]
  • [category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins]

    • Gene

    Coordinates
    1,646,999 1,647,952

    Phenotypes of a mutant

  • inactivation of ''[gene|06971E9AAB033E2878914A76645F99E97CE8A90A|fmt]'' suppresses the synthetic lethality of the ''[gene|3D41FB608DB70B9482312A1BBCCDBDA7FB713AFA|defA] [gene|53B760316B19E142FC3ECAD2CFAA540377B08BBC|defB]'' double mutant [Pubmed|27983482]
  • essential according to Kobayashi et al. [Pubmed|12682299], but a deletion mutant was constructed by Cai et al. [Pubmed|27983482]
  • the mutant is defective for [SW|biofilm formation], motility, and [SW|sporulation] [Pubmed|27983482]
  • the mutant exhibits increased sensitivity to metal ion excess and oxidative stress [Pubmed|27983482]

    • The protein

    Catalyzed reaction/ biological activity

  • 10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) + H2O = tetrahydrofolate + N-formylmethionyl-tRNA(fMet) (according to Swiss-Prot)

    • Protein family

  • fmt family (single member, according to UniProt)

    • Structure

  • [PDB|3RFO] (from ''Bacillus anthracis'', 69% identity, 89% similarity)

    • Expression and Regulation

    Operons

    genes
    [gene|3D41FB608DB70B9482312A1BBCCDBDA7FB713AFA|defA]-[gene|06971E9AAB033E2878914A76645F99E97CE8A90A|fmt]-[gene|1370D8783450D538C71E3DE8EA5B37DFEE073FF0|yloM]-[gene|5DEBD84E5937DB8B7F29C729FAA0076DF86A5451|yloN]
    description
    [Pubmed|16964327]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|16964327], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
    • view in new tab

    genes
    [gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC]-[gene|6AF1CB8998BE9C71DF4F1201A7F74FF7E75CB799|remA]-[gene|1BC994DE60A7BB35DEDD7154581A396D29AA94A7|gmk]-[gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH]-[gene|2B67C63442F28F6BCBA3BA6DE4B563C73E8DF16C|yloI]-[gene|AF5ADDA2A98EC18BB72A81AA0336E639C0D1F430|priA]-[gene|3D41FB608DB70B9482312A1BBCCDBDA7FB713AFA|defA]-[gene|06971E9AAB033E2878914A76645F99E97CE8A90A|fmt]-[gene|1370D8783450D538C71E3DE8EA5B37DFEE073FF0|yloM]-[gene|5DEBD84E5937DB8B7F29C729FAA0076DF86A5451|yloN]

    description

  • [pubmed|22383849]
    • view in new tab

    additional information

  • [protein|search|translation] is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]

    • Biological materials

    Mutant

  • BKE15730 ([gene|06971E9AAB033E2878914A76645F99E97CE8A90A|fmt]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE15730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAATACGATTCTCGTCA, downstream forward: _UP4_GCCGGTGATGTGTTAGGAGT
  • BKK15730 ([gene|06971E9AAB033E2878914A76645F99E97CE8A90A|fmt]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK15730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAATACGATTCTCGTCA, downstream forward: _UP4_GCCGGTGATGTGTTAGGAGT

    • References

  • 8887566,19171795,27983482,12682299